Contents

• Introduction
  • Accessing Multiseq
  • Installation
  
  
• Using and Managing Data
  • Importing from files
  • Sequences and BLAST searching
  
  
• Working in the Environment
  • Title Display
  • Grouping
  • Visualization Menu
  • Representation Menu
  • Info Viewer
  • Selecting vs. Marking
  
  
• File Menu
  • New Session
  • Load Session
  • Save Session
  • Export Data
  • Save Screenshot
  • Preferences
  • Choose Working Directory
  • Cleanup Representation
  
  
• Edit Menu
  • Enable Editing
  • Remove Gaps
  • Edit In Text Editor
  
  
• Search Menu
  • Find, Find Next, Find Previous
  • Select Contact Shells
  • Select Non-Redundant Set
  • Select Residues
  
  
• Tools Menu
  • Performing Alignments
  • Phylogenetic Tree
  • Plot Data
  
  
• Options Menu
  • Atom Picking
  • Grouping
  
  
• View Menu
  • Zoom
  • Coloring
  • Highlight Style
  • Highlight Color
  • Color Scale
  • Zoom Window
  
  
• Appendices
  • Appendix A: $Q$
  • Appendix B: $Q_H$
  • Appendix B: $Q_{res}$ Structural Similarity per Residue
  
  
• About this document ...