Representation Menu

Whenever you load a sequence or structure into MultiSeq an `r' box will appear next to the molecule's ID. If you left-click this box, you can change the representation in Multiseq in multiple ways

Duplicate simply duplicates the molecule of interest

Sequence displays the Nucleotide/AA sequence

Bar displays the sequence as a length bar with no Nucleotide/AA sequence

Secondary Alignment shows the secondary structure in the Multiseq window