Save Session

You can save a session of MultiSeq, with all of the files, alignments, and visual representations, by simply going to the File $\rightarrow$ Save Session. You will be prompted to save the session, and will have the opportunity to create a unique name for the session here. Hit the OK button. A file will be generated with a .multiseq extention along with a directory filled with various files necessary to load the saved session into MultiSeq. Please note that both the generated file and directory have to be in the same directory location in order to load up the session in the future properly.