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pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
|
Functions | |
def | importSBMLModel |
Helper Functions ##. More... | |
def | importSBMLModelL3V1 |
def | getRate |
def | readSBMLtoCME |
Read an SBML file for the reaction model for a CME simulation. More... | |
def | readSBMLtoRDME |
Read an SBML file for the reaction model for a RDME simulation. More... | |
def | readSBMLtoRegion |
Read an SBML file for the reaction model into a specific region of the RDME simulation. More... | |
def pySTDLM.SBMLReader.getRate | ( | rxn, | |
rcts, | |||
prds, | |||
sim, | |||
globalP, | |||
globalPV | |||
) |
def pySTDLM.SBMLReader.importSBMLModel | ( | filename | ) |
Helper Functions ##.
def pySTDLM.SBMLReader.importSBMLModelL3V1 | ( | model, | |
sim, | |||
region = None |
|||
) |
def pySTDLM.SBMLReader.readSBMLtoCME | ( | sim, | |
filename | |||
) |
Read an SBML file for the reaction model for a CME simulation.
sim | A CMESimulation object |
filename | A SBML filename/filepath |
def pySTDLM.SBMLReader.readSBMLtoRDME | ( | sim, | |
filename | |||
) |
Read an SBML file for the reaction model for a RDME simulation.
sim | A RDMESimulation object |
filename | A SBML filename/filepath |
def pySTDLM.SBMLReader.readSBMLtoRegion | ( | sim, | |
region, | |||
filename | |||
) |
Read an SBML file for the reaction model into a specific region of the RDME simulation.
sim | A RDMESimulation object |
region | A region name that already exists in the RDMESimulation |
filename | A SBML filename/filepath |