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pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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A standard library of functionality that is commonly used in biological simulations. More...
Namespaces | |
CellArranger | |
Cells | |
Distributions | |
Fitting | |
NetworkVisualization | |
OnTheFly | |
PostProcessing | |
SBMLReader | |
StandardCells | |
StandardReactions | |
StandardReactionSystems | |
Variables | |
list | __all__ = ['StandardReactions', 'StandardReactionSystems', 'StandardCells', 'Cells', 'CellArranger', 'Distributions', 'PostProcessing', 'NetworkVisualization'] |
A standard library of functionality that is commonly used in biological simulations.
Three sets of functionality exist including "StandardReactions" which include standard reactions such as Michealis-Menton, membrane transport, transporters, etc. "StandardReactionSystems" includes published reaction systems from a variety of cells including the MinDE system, Lac switch systems in E. coli etc. Finally, "StandardCells" includes a number of standard cell geometries.
list pySTDLM.__all__ = ['StandardReactions', 'StandardReactionSystems', 'StandardCells', 'Cells', 'CellArranger', 'Distributions', 'PostProcessing', 'NetworkVisualization'] |