pyLM
v1.1
A Python Problem Solving Environment for the simulation of stochastic biological systems
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Here is a list of all namespace members with links to the namespace documentation for each member:
- _ -
__all__ :
pyLM
,
pySTDLM
- a -
addLacTwoStateSystem() :
pySTDLM::StandardReactionSystems
addMembraneTransporter() :
pySTDLM::StandardReactions
addMichaelisMenten() :
pySTDLM::StandardReactions
addMinDESystem() :
pySTDLM::StandardReactionSystems
addPassiveTransport() :
pySTDLM::StandardReactions
addPTSPathway() :
pySTDLM::StandardReactionSystems
addReversibleMichaelisMenten() :
pySTDLM::StandardReactions
angstrom() :
pyLM::units
args :
peekFile
- b -
binwidth :
pySTDLM::Fitting
buildDividingEColiCell() :
pySTDLM::StandardCells
buildEColiCell() :
pySTDLM::StandardCells
buildFilamentousEColiCell() :
pySTDLM::StandardCells
buildSphericalEColiCell() :
pySTDLM::StandardCells
- c -
closeLMFile() :
pySTDLM::PostProcessing
cm() :
pyLM::units
counts :
pySTDLM::Fitting
createExpressionModel() :
pySTDLM::StandardReactions
- d -
day() :
pyLM::units
displayRDMESetup() :
pyLM::ipyInterface
DistributionComparator() :
pySTDLM::Fitting
- g -
getAvgVarTrace() :
pySTDLM::PostProcessing
getHistogram() :
pySTDLM::PostProcessing
getOccupancyKymograph() :
pySTDLM::PostProcessing
getPhaseSpace() :
pySTDLM::PostProcessing
getRate() :
pySTDLM::SBMLReader
getReactionString() :
pyLM::ipyInterface
getSpecieTrace() :
pySTDLM::PostProcessing
getTimesteps() :
pySTDLM::PostProcessing
- h -
hasBio :
pySTDLM::StandardReactions
hasGexf :
pySTDLM::NetworkVisualization
hr() :
pyLM::units
- i -
importSBMLModel() :
pySTDLM::SBMLReader
importSBMLModelL3V1() :
pySTDLM::SBMLReader
- l -
LMformatter :
pyLM::LMLogger
LMLogger :
pyLM::LMLogger
- m -
measure :
pySTDLM::Fitting
micron() :
pyLM::units
microsecond() :
pyLM::units
minute() :
pyLM::units
mm() :
pyLM::units
ms() :
pyLM::units
- n -
n :
peekFile
nm() :
pyLM::units
ns() :
pyLM::units
nullHandlerLM :
pyLM::LMLogger
- o -
openLMFile() :
pySTDLM::PostProcessing
- p -
packFastGrowingEcoli() :
pySTDLM::StandardCells
packSlowGrowingEcoli() :
pySTDLM::StandardCells
parser :
peekFile
plotAvgVar() :
pySTDLM::PostProcessing
plotAvgVarFromFile() :
pySTDLM::PostProcessing
plotCMEDynamicReactionNetwork() :
pySTDLM::NetworkVisualization
plotCMEReactionNetwork() :
pySTDLM::NetworkVisualization
plotOccupancyKymograph() :
pySTDLM::PostProcessing
plotPhaseSpace() :
pySTDLM::PostProcessing
plotRDMEReactionNetwork() :
pySTDLM::NetworkVisualization
plotReactionNetwork() :
pySTDLM::NetworkVisualization
plotTrace() :
pySTDLM::PostProcessing
plotTraceFromFile() :
pySTDLM::PostProcessing
- r -
readSBMLtoCME() :
pySTDLM::SBMLReader
readSBMLtoRDME() :
pySTDLM::SBMLReader
readSBMLtoRegion() :
pySTDLM::SBMLReader
- s -
second() :
pyLM::units
setLMLogConsole() :
pyLM::LMLogger
setLMLogFile() :
pyLM::LMLogger
setLMLoggerLevel() :
pyLM::LMLogger
showAvgVar() :
pySTDLM::PostProcessing
showAvgVarFromFile() :
pySTDLM::PostProcessing
showOccupancyKymograph() :
pySTDLM::PostProcessing
showTrace() :
pySTDLM::PostProcessing
showTraceFromFile() :
pySTDLM::PostProcessing
- t -
t :
peekFile
tf :
peekFile
tqdm() :
pyLM::CME
,
pyLM::RDME
- w -
writeTable() :
pyLM::ipyInterface
Generated on Wed Nov 9 2016 10:47:46 for pyLM by
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